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List of Projects

TSUBAME Encouragement Program for Young User and Female User FY2018, FY2017, FY2016
TSUBAME Encouragement Program for Younger User

TSUBAME Encouragement Program for Young User and Female User

FY2018

  • Development of Flexible Docking Method Based on Parallel Cascade Selection Molecular Dynamics Simulation
    Ryuhei Harada(Univ. of Tsukuba)
  • Investigations on the mechanisms of low salinity EOR by pore scale flow simulation
    Fei Jiang(Yamaguchi Univ.)
  • Finding a drug candidate regulating protein function at an allosteric site
    Yuko Ito(AIST)
  • Rational predictive antibody engineering through molecular simulations
    Daisuke Kuroda(Univ. of Tokyo)
  • DEM-CFD modelling for dehydrogenation of methylcyclohexane on Pt/γ-Al2O3 catalyst.
    Lapizar, Maria Precious Paula Suarnaba(Tokyo Tech)
  • Elucidation of the flow and heat transfer characteristics for the compact and high efficiency electrical rotating machine
    Tomohisa Yuasa(Univ. of Tsukuba)
  • Radiation Hydrodynamic Simulation of First Stars
    Satoshi Tanaka(Univ. of Tsukuba)
  • Rapid design of thermally activated delayed fluorescent molecules with excellent color purity by means of materials informatics based on electronic structures
    Terashima Chieko(Ochanomizu Univ.)
  • Computational Analysis of the Variations of DNA Dynamics and Nucleosome Forming Ability Induced by DNA Methylation.
    Takeru Kameda(Hiroshima Univ.)
  • Molecular dynamics simulation for the elucidation of the molecular transportation behavior in CO2 hydrate
    Rintaro Fujikawa(Univ. of Tsukuba)
  • Theoretical elucidation of intensity anomalies observed in the vibrational spectrum of transition metal noble gas compounds
    Yuriko Ono(Hokkaido Univ.)
  • Analysis of non-equilibrium local heating generated by microwave irradiation
    Ano Taishi(Tokyo Tech)
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  • Interaction Analysis of Extracellular Matrix Protein via All-Atom Molecular Dynamics Simulation
    Shinji Iida(Osaka Univ.)
  • Molecular dynamics simulation for protein-protein interaction using a novel generalized ensemble method without artificial bias potentials
    Tomonori Hayami(Osaka Univ.)
  • Structural analysis of prion protein by using generalized-ensemble simulations
    Hiroki Otaki(Nagasaki Univ.)
  • The Flexible Large-Capacity Memory System for High Performance and High Productivity
    Hiroko Midorikawa(Seijo Univ.)

FY2017

  • Yuko OTANI (Univ. of Tokyo)
    Dynamic control of peptide conformation by using synthetic bridged proline analogs
  • Hiroshi Watanabe (Univ. of Tokyo)
    Development and application of molecular dynamics simulation for hydrogen ion in solution
  • Misa SAYAMA (Univ. of Tokyo)
    Theoretical Analysis of Lipid Binding Pathway to Membrane Receptor Proteins
  • Yohei Miki (Univ. of Tsukuba)
    Hunting wandering intermediate mass black holes in galactic halo
  • Ryuhei Harada (Univ. of Tsukuba)
    Developments of Transition Path Sampling Methods based on Parallel Cascade Selection Molecular Dynamics Simulation
  • Hiroki Otaki (Nagasaki Univ.)
    Molecular dynamics study of aggregation behavior of amyloid fibrils
  • Xiao Ma (Univ. of Tsukuba)
    Molecular dynamics simulation for the elucidation of the molecular diffusion behavior in the CO2 hydrate
  • Azusa MURAOKA (Japan Women's Univ.)
    Solvent effects on the helical inversion reaction pathway of the helical molecules

FY2016

  • Yu YAMAMORI (Osaka Univ.)
    Application of Sparse Structure Learning to Analysis of Molecular Simulation
  • Yuko OTANI (Univ. of Tokyo)
    Generation of protein structure motif based on amino acid sequence involving synthetic bridged proline derivatives
  • Shinji IIDA (Osaka Univ.)
    Functional Analyses of an Intrinsically Disordered Protein by using an Original Extended Ensemble Molecular Dynamics Approach
  • Misa SAYAMA (Univ. of Tokyo)
    Theoretical Analysis of Interactions of Ligands with Membrane Receptor Proteins
  • Kouki KAWAMURA (NMRI)
    Large-Scale Particle Method for Simulation of Ship Behaviour and Safe Ship Design on TSUBAME 2.5
  • Masatoshi TAKAYANAGI (Univ. of Yamanashi)
    An implementation of the communication avoiding QR on GPU clusters
  • Kenji KAWAI (Tokyo Tech & Univ. of Tokyo)
    Numerical research of elastic wave propagation in the porous rock
  • Xiao Ma (Univ. of Tsukuba)
    Molecular dynamics simulation for the elucidation of the molecular diffusion behavior at the growth phase of the CO2 hydrat
  • Azusa MURAOKA (Japan Women's Univ.)
    Theoretical study on the inversion reaction process of high-order helical molecules
  • Chie MOTONO (AIST)
    Protein-ligand binding prediction using Supervised MD simulation

TSUBAME Encouragement Program for Younger User

Apr FY2017

  • Yohei Cho (Tokyo Tech)
    Title of Project: Improvement of Aerodynamic Property of Human Powered Aircraft by Analyzing Surrounding Fluid Flow (Continuous research)

Jan FY2016

  • Hanaya OKUDA (Univ. of Tokyo)
    Title of Project: Calculations of frictions on (001) plane of brucite (Continuous research)
  • Yohei Cho (Tokyo Tech)
    Title of Project: Improvement of Aerodynamic Property of Human Powered Aircraft by Analyzing Surrounding Fluid Flow
  • Rina YAMAYA (Univ. of Tokyo)
    Title of Project: Waveform inversion for source parameters of deep earthquakes and earth structure (Continuous research)

Oct FY2016

  • Hanaya OKUDA (Univ. of Tokyo)
    Title of Project: Calculations of frictions on (001) plane of brucite

Jul FY2016

  • Rina YAMAYA (Univ. of Tokyo)
    Title of Project: Waveform inversion for source parameters of deep earthquakes and earth structure

Apr FY2016

  • Takeya INOUE (Tokyo Tech)
    Title of Project: Fluid Flow Analysis of a Human Powered Aircraft to improve Design accuracy (Continuous research)

Jan FY2015

  • Takeya INOUE (Tokyo Tech)
    Title of Project: Fluid Flow Analysis of a Human Powered Aircraft to improve Design accuracy
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