TSUBAME Encouragement Program for Young User and Female User FY2024, FY2023, FY2022, FY2021, FY2020, FY2019, FY2018, FY2017, FY2016
TSUBAME Encouragement Program for Younger User FY2024, FY2023, FY2022, FY2019, FY2018, FY2017, FY2016, FY2015

TSUBAME Encouragement Program for Young User and Female User

FY2024

• Shigeki Ishida( TokyoInstitute of technology Rio Yokota Lab)
  Trainingmulti-lingual Distil-Whisper
• Hiroki Naganuma( University of Montreal, Mila - Quebec Artificial Intelligence Institute)
  CurvatureRegularization in Large Language Model Training for Downstream Task
• Shinji Iida( KitasatoUniversity, School of Frontier Engineering)
  Developing aDiffusion Model Combined with Molecular Dynamics Simulations for GeneratingPeptide Conformational Ensembles
• Mai Sawada( School ofEnvironment and Society, Tokyo Institute of Technology)
  Insight intosoil macro and micro contact angles from computational fluid dynamics
• Kie Araki( Tokyo Woman'sChristian University)
  Analysis ofthe interaction between taste receptor proteins and ligands using moleculardynamics simulations　
• Mayu Muramatsu( KeioUniversity)
  Investigation of Three-dimensional Microstructure of Dual Phase SteelsExhibiting high Strength and High Ductility by Machine Le
• van Eerden FlorisJan( ResearchInstitute for Microbial Diseases (BIKEN), Osaka University)
  Mechanism ofinfectivity enhancing antibodies in SARS-CoV-2
• Mutsuyo WADA( Division ofSystematic Pharmaceutical and Life Sciences, Graduate School ofPharmaceutical Sciences, Hoshi University)
  Developmentof machine learning approaches for Antigen-Antibody Binding Processes UsingVAE

FY2023

• Hiroki Naganuma( University of Montreal )
  Comprehensive Evaluation of the Next Generation Optimizers onOut-of-DistributionGeneralization　　　　　　　　　　　　　　　　　　　　　 　　　　
• Sandhya P. Tiwari( Institute of Protein Research, Osaka University )
  Enhancedsampling MD simulations to determine the role of conformational fluctuationson the reduced catalysis in G67 allosteric
• Kaisei Takahashi( Japan Advanced Institute of Science and Technology )
  A WeightAveraging Method for Mitigating the Effect of Distribution Shift in DeepReinforcement Learning

FY2022

• Takeru Kameda( College of Life Sciences, Ritsumeikan University)
  Pseudo-ModeDecomposition of Principal Structural Deformations in Nucleic Acid SegmentUsing Molecular Dynamics Analysis
• Hiroki Naganuma( University of Montreal)
  Developmentof Cost-Efficient and Fast Convergence Optimization Algorithms for GenerativeAdversarial Models

FY2021

• Erica Cooper( National Institute of Informatics )
  ExpressiveEnd-to-End MIDI-to-Performance Music Synthesis
• Kun Li( Kagawa Univ. )
  Large-Scale Analysis of Ultra-Wideband Pulsed Electromagnetic Fields forIntra-Vehicle Biological Sensing
• Yuki SUZUKI (Tokyo Tech)
  Quantitative estimation of multipath effect by computation of 3-D syntheticseismogram
• Mohini Yadav( Chiba Institute of Technology)
  Dynamicresidue interaction network analysis of the Spike protein of SARS-CoV-2
• Naohito Okumura (Tokyo Tech)
  Distributed rendering using multiple nodes for social virtual realityapplication
• Shinji IIDA (N2PC, Next generation Natural Products Chemistry)
  How DoesSARS-CoV-2 Main Protease Respond to a Pseudo Reaction Heat?
• Masaki Ootawa (Kindai Univ.)
  Freeenergy calculation of MAO-B/Tau and THK-5351 complex system

FY2020

• Floris van Eerden (Osaka Univ.)
  Structural Mechanism of T cell activation
• Tran Phuoc Duy (Tokyo Tech)
  In silico study of hachimoji DNA： toward the new functional biomaterials
• MOHINI YADAV (Chiba Institute of Technology)
  Theoretical study on the molecular mechanism of subtype-specific drug resistance in influenza A virus
• Shinji IIDA (N2PC, Next generation Natural Products Chemistry)
  Molecular dynamics simulation for druggable cryptic site on protein surface
• Takeru Kameda (Hiroshima Univ./RIKEN)
  Analysis of the Unwrapping Dynamics of DNA from Nucleosome Dependent on DNA Methylation
• Erica Cooper (National Institute of Informatics)
  Transfer Learning for End-to-End Multi-Instrument MIDI-to-Music Synthesis
• Kota Honda (Univ. of Tsukuba)
  Molecular dynamics study on molecular diffusion coefficient in CO2 hydrate
• Yi Zhao (National Institute of Informatics)
  Exploring speaker representations and acoustic feature embeddings for VQ-VAE based voice conversion
• Xiao MA (NMRI, National Maritime Research Institute)
  Quantum chemistry simulation to elucidate the influence of temperature on chemical reaction on marine oxidation catalyst
• Naohito Okumura (Tokyo Tech)
  Scalable distributed rendering using multiple nodes for various models with clients
• Yu Komatsu (Astrobiology Center, NINS)
  Search for pigments utilizing NIR and oxidizing H2O
• Yuko Otani (Univ. of Tokyo)
  Study on dynamics of target proteins and the non-natural ligands

FY2019

• Large Scale Multi-physics Numerical Simulation of Alkaline Water Electrolysis with GPU
  Kodama Manabu (Tokyo Tech)
• Membrane Penetrations of Cyclic Peptides Predicted by PaCS-MD
  Ryuhei Harada (Univ. of Tsukuba)
• Molecular dynamics simulation of early process of amyloid fibril formation
  Tomoko Mizuguchi (Kyoto Institute of Technology)
• Computational Analysis of the Nucleosome Sliding Dynamics Dependent on DNA Methylation Using Extended Ensemble Methods
  Takeru Kameda (Hiroshima Univ.)
• Docking simulation between　medium molecule drug and Heat Shock Protein
  Matsukura Lisa (Kindai Univ.)
• Theoretical study on the molecular mechanism of drug resistance of influenza virus
  Mohini Yadav(Chiba Institute of Technology)
• Atomic-level Characterization for the Entire Transport Cycle of ADP/ATP Carrier Transporter
  Masahiko Taguchi (Kyoto Univ.)
• Theoretical Analysis of Activation Mechanism of the Membrane Receptors by Lipids
• Misa SAYAMA (Univ. of Tokyo)
• Development of calculation method of mutual solubility for long-chain polymer melt using all-atom molecular dynamics simula
  Yamada Kazuo (Osaka Univ.)
• Molecular dynamics simulation to elucidate the mechanism of attachment/detachment of molecules on catalyst surface
  Xiao MA (NMRI, National Maritime Research Institute)
• Development of computational code for air-lasing simulator
  ZHANG YOUYUAN(Univ. of Tokyo)

FY2018

• Development of Flexible Docking Method Based on Parallel Cascade Selection Molecular Dynamics Simulation
  Ryuhei Harada(Univ. of Tsukuba)
• Investigations on the mechanisms of low salinity EOR by pore scale flow simulation
  Fei Jiang(Yamaguchi Univ.)
• Finding a drug candidate regulating protein function at an allosteric site
  Yuko Ito(AIST)
• Rational predictive antibody engineering through molecular simulations
  Daisuke Kuroda(Univ. of Tokyo)
• DEM-CFD modelling for dehydrogenation of methylcyclohexane on Pt/γ-Al2O3 catalyst.
  Lapizar, Maria Precious Paula Suarnaba(Tokyo Tech)
• Elucidation of the flow and heat transfer characteristics for the compact and high efficiency electrical rotating machine
  Tomohisa Yuasa(Univ. of Tsukuba)
• Radiation Hydrodynamic Simulation of First Stars
  Satoshi Tanaka(Univ. of Tsukuba)
• Rapid design of thermally activated delayed fluorescent molecules with excellent color purity by means of materials informatics based on electronic structures
  Terashima Chieko(Ochanomizu Univ.)
• Computational Analysis of the Variations of DNA Dynamics and Nucleosome Forming Ability Induced by DNA Methylation.
  Takeru Kameda(Hiroshima Univ.)
• Molecular dynamics simulation for the elucidation of the molecular transportation behavior in CO2 hydrate
  Rintaro Fujikawa(Univ. of Tsukuba)
• Theoretical elucidation of intensity anomalies observed in the vibrational spectrum of transition metal noble gas compounds
  Yuriko Ono(Hokkaido Univ.)
• Analysis of non-equilibrium local heating generated by microwave irradiation
  Ano Taishi(Tokyo Tech)

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• Interaction Analysis of Extracellular Matrix Protein via All-Atom Molecular Dynamics Simulation
  Shinji Iida(Osaka Univ.)
• Molecular dynamics simulation for protein-protein interaction using a novel generalized ensemble method without artificial bias potentials
  Tomonori Hayami(Osaka Univ.)
• Structural analysis of prion protein by using generalized-ensemble simulations
  Hiroki Otaki(Nagasaki Univ.)
• The Flexible Large-Capacity Memory System for High Performance and High　Productivity
  Hiroko Midorikawa(Seijo Univ.)

FY2017

• Yuko OTANI (Univ. of Tokyo)
  Dynamic control of peptide conformation by using synthetic bridged proline analogs
• Hiroshi Watanabe (Univ. of Tokyo)
  Development and application of molecular dynamics simulation for hydrogen ion in solution
• Misa SAYAMA (Univ. of Tokyo)
  Theoretical Analysis of Lipid Binding Pathway to Membrane Receptor Proteins
• Yohei Miki (Univ. of Tsukuba)
  Hunting wandering intermediate mass black holes in galactic halo
• Ryuhei Harada (Univ. of Tsukuba)
  Developments of Transition Path Sampling Methods based on Parallel Cascade Selection Molecular Dynamics Simulation
• Hiroki Otaki (Nagasaki Univ.)
  Molecular dynamics study of aggregation behavior of amyloid fibrils
• Xiao Ma (Univ. of Tsukuba)
  Molecular dynamics simulation for the elucidation of the molecular diffusion behavior in the CO2 hydrate
• Azusa MURAOKA (Japan Women's Univ.)
  Solvent effects on the helical inversion reaction pathway of the helical molecules

FY2016

• Yu YAMAMORI (Osaka Univ.)
  Application of Sparse Structure Learning to Analysis of Molecular Simulation
• Yuko OTANI (Univ. of Tokyo)
  Generation of protein structure motif based on amino acid sequence involving synthetic bridged proline derivatives
• Shinji IIDA (Osaka Univ.)
  Functional Analyses of an Intrinsically Disordered Protein by using an Original Extended Ensemble Molecular Dynamics Approach
• Misa SAYAMA (Univ. of Tokyo)
  Theoretical Analysis of Interactions of Ligands with Membrane Receptor Proteins
• Kouki KAWAMURA (NMRI)
  Large-Scale Particle Method for Simulation of Ship Behaviour and Safe Ship Design on TSUBAME 2.5
• Masatoshi TAKAYANAGI (Univ. of Yamanashi)
  An implementation of the communication avoiding QR on GPU clusters
• Kenji KAWAI (Tokyo Tech & Univ. of Tokyo)
  Numerical research of elastic wave propagation in the porous rock
• Xiao Ma (Univ. of Tsukuba)
  Molecular dynamics simulation for the elucidation of the molecular diffusion behavior at the growth phase of the CO2 hydrat
• Azusa MURAOKA (Japan Women's Univ.)
  Theoretical study on the inversion reaction process of high-order helical molecules
• Chie MOTONO (AIST)
  Protein-ligand binding prediction using Supervised MD simulation

TSUBAME Encouragement Program for Younger User

Apr FY2024

• Kotaro YOSHIDA (Tokyo Tech)
  Robust andReliable Vision-Language Model Learning by Information Bottleneck
• Ayato FUJIBAYASHI (Kanagawa Institute of Technology)
  Knowledgedistillation using data generated from mathematical formulae and itsevaluation
• Sota TAKAHASHI (Kanagawa Institute of Technology)
  Introducingscheduling functionality into data augmentation to improve learningefficiency

Apr FY2023

• Takuma KOMABA (Tokyo Tech)
  Three-Dimensional Flow Simulation around Fairing of a Human Powered Aircraft
• Kotaro YOSHIDA (Tokyo Tech)
  Uncertainty Calibration in Deep Neural Networks through Invariant RiskMinimization
• Yuta KOMORI (Tokyo Tech High School of Science and Technology)
  TheOptimization of Position Estimation Using Machine-Learning, InertialNavigation and Signal-Intensity

Apr FY2022

• Komaba Takuma (Tokyo Tech)
  Three-Dimensional Flow Simulation around Fairing of a Human Powered Aircraft

Apr FY2019

• Kota HONDA (Univ. of TSUKUBA)
  Molecular dynamics study on molecular diffusion coefficient in CO2 hydrate

Apr FY2018

• YOSHIMURA Taichi (Osaka Univ.)
  Title of Project: Numerical simulation of crystal growth of Silicon Carbide using the Bottom Seeded Solution Growth method
• SASAKI Miori (Ochanomizu Univ.)
  Title of Project: A theoretical study on phosphorescence emission from fluorescent molecule embedded in hyper nano-space constructed with organic molecules

Apr FY2017

• Yohei Cho (Tokyo Tech)
  Title of Project: Improvement of　Aerodynamic　Property of Human Powered Aircraft by Analyzing Surrounding Fluid Flow (Continuous research)

Jan FY2016

• Hanaya OKUDA (Univ. of Tokyo)
  Title of Project: Calculations of frictions on (001) plane of brucite (Continuous research)
• Yohei Cho (Tokyo Tech)
  Title of Project: Improvement of　Aerodynamic　Property of Human Powered Aircraft by Analyzing Surrounding Fluid Flow
• Rina YAMAYA (Univ. of Tokyo)
  Title of Project: Waveform inversion for source parameters of deep earthquakes and earth structure (Continuous research)

Oct FY2016

• Hanaya OKUDA (Univ. of Tokyo)
  Title of Project: Calculations of frictions on (001) plane of brucite

Jul FY2016

• Rina YAMAYA (Univ. of Tokyo)
  Title of Project: Waveform inversion for source parameters of deep earthquakes and earth structure

Apr FY2016

• Takeya INOUE (Tokyo Tech)
  Title of Project: Fluid Flow Analysis of a Human Powered Aircraft to improve Design accuracy (Continuous research)

Jan FY2015

• Takeya INOUE (Tokyo Tech)
  Title of Project: Fluid Flow Analysis of a Human Powered Aircraft to improve Design accuracy