How to make the final result

Problem [revised]

"For a given set of proteins (i.e., a set of amino sequences), find a large (lager is better) protein family w.r.t. sequence identity >= 25."

Output specification

We provide an output library "out.o." This libray puts the following output in a file "out.txt." 
****** start at 3289310.000000 ******     ---- staring time stamp (wall clock)
3 124 4 9 23                              ---- protein number stating at 0
3289310.000000                            ---- and time stamp
333 987 34 65 78                          ---- protein number
3289310.000000                            ---- and time stamp stating at 0
******* end at 3289310.000000 *******     ---- ending time stamp
See a sample program "sample.c." to understand the function of this library.

We will not provide the estimated size of the final results. So, you should estimate this by yourselves.

Evaluation

  1. We run each program more than four (wall clock) minutes in dedicated condition, then kill whole processes.
  2. We adopt the latest result in the file 'out.txt' which does not exceeds three minutes after created.
  3. If the size of the family is the same, lesser time would be better.

Source code

Put final programms in the directory "final" of each team's home directory.